U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX2396676: GSM2417347: Injured_Brain_Meninges_1; Mus musculus; RNA-Seq
6 ILLUMINA (Illumina HiSeq 2500) runs: 54M spots, 5.4G bases, 1.8Gb downloads

Submitted by: NCBI (GEO)
Study: Characterization of meningeal type 2 innate lymphocytes and their response to CNS injury
show Abstracthide Abstract
The meningeal space is occupied by a diverse repertoire of innate and adaptive immune cells. CNS injury elicits a rapid immune response that affects neuronal survival and recovery, but the role of meningeal inflammation in CNS injury remains poorly understood. Here we describe group 2 innate lymphoid cells (ILC2s) as a novel cell type resident in the healthy meninges that is activated following CNS injury. ILC2s are present throughout the naïve mouse meninges, though are concentrated around the dural sinuses, and have a unique transcriptional profile relative to lung ILC2s. After spinal cord injury, meningeal ILC2s are activated in an IL-33 dependent manner, producing type 2 cytokines. Using RNAseq, we characterized the gene programs that underlie the ILC2 activation state. Finally, addition of wild type lung-derived ILC2s into the meningeal space of IL-33R-/- animals improves recovery following spinal cord injury. These data characterize ILC2s as a novel meningeal cell type that responds to and functionally affects outcome after spinal cord injury, and could lead to new therapeutic insights for CNS injury or other neuroinflammatory conditions. Overall design: ILC2s were isolated from 10 week C57/Bl6 mice with and without spinal cord injury (1 day post injury). 5 mice were pooled per group, with meninges dissected, digested, and FACs sorted (CD45+/DAPI-/Lin–/St2+/Thy1+) directly into RNA lysis buffer.
Sample: Injured_Brain_Meninges_1
SAMN06111866 • SRS1837791 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was extracted using Arcturus PicoPure kit (Thermo Fisher) Ovation RNA-Seq System V2 kit (Nugen) for initial RNA amplification. After purification, the cDNA was fragemented and further library steps performed.
Experiment attributes:
GEO Accession: GSM2417347
Links:
Runs: 6 runs, 54M spots, 5.4G bases, 1.8Gb
Run# of Spots# of BasesSizePublished
SRR50780174,969,259496.9M181Mb2016-12-14
SRR50780189,788,784978.9M330.4Mb2016-12-14
SRR50780199,797,861979.8M330Mb2016-12-14
SRR50780209,761,153976.1M328.9Mb2016-12-14
SRR50780219,817,720981.8M330.3Mb2016-12-14
SRR50780229,877,855987.8M331.6Mb2016-12-14

ID:
3486563

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...